clustalw alignment function Search Results


clustalw multiple alignment function  (Bioedit Company)
90
Bioedit Company clustalw multiple alignment function
Clustalw Multiple Alignment Function, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/clustalw multiple alignment function/product/Bioedit Company
Average 90 stars, based on 1 article reviews
clustalw multiple alignment function - by Bioz Stars, 2026-03
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clustalw multiple alignment function  (MacVector inc)
90
MacVector inc clustalw multiple alignment function
Amino acid sequence alignments of RmAQP1-3 with putative aquaporins from other tick species. Alignment was by the <t>ClustalW</t> multiple alignment function of MacVector 12.7.5 using the Gonnet matrix with open gap penalty of 10 and extend gap penalty of 0.05. Determination of amino acid similarity was by chemical properties of amino acid side chains with DE, AGILV, NQ, FWY, RHK, ST, CM, and P comprising the groups considered as conservative substitutions. The accession numbers for the putative tick aquaporins from R. appendiculatus , R. sanguineus , I. scapularis , I. ricinus , and D. variabilis are CD780384, CAR66115, XP_002399794, CAX48964, and ABI53034, respectively. One member each from the human aquaporin families 3 (NP 004916) and 7 (NP 001161) are also included in the alignment. The RmAQP1 was used as the model for comparing other sequences, with identities indicated by colon (:) and similarities by period (.). In the summary line below the 10 aligned sequences, a colon (:) notes amino acid positions where all 10 sequences contain the identical amino acid, a period (.) indicates all 10 sequences contain identical or similar amino acids, and an asterisk (*) indicates 9 of the 10 aligned sequences have identical or similar amino acids. Gaps inserted to optimize alignments are indicated by a dash (−). The shaded portions of the RmAQP1 sequence indicate the six predicted transmembrane helical regions.
Clustalw Multiple Alignment Function, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/clustalw multiple alignment function/product/MacVector inc
Average 90 stars, based on 1 article reviews
clustalw multiple alignment function - by Bioz Stars, 2026-03
90/100 stars
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protein alignment and clustalw function in macvector version 18.5.1  (MacVector inc)
90
MacVector inc protein alignment and clustalw function in macvector version 18.5.1
Amino acid sequence alignments of RmAQP1-3 with putative aquaporins from other tick species. Alignment was by the <t>ClustalW</t> multiple alignment function of MacVector 12.7.5 using the Gonnet matrix with open gap penalty of 10 and extend gap penalty of 0.05. Determination of amino acid similarity was by chemical properties of amino acid side chains with DE, AGILV, NQ, FWY, RHK, ST, CM, and P comprising the groups considered as conservative substitutions. The accession numbers for the putative tick aquaporins from R. appendiculatus , R. sanguineus , I. scapularis , I. ricinus , and D. variabilis are CD780384, CAR66115, XP_002399794, CAX48964, and ABI53034, respectively. One member each from the human aquaporin families 3 (NP 004916) and 7 (NP 001161) are also included in the alignment. The RmAQP1 was used as the model for comparing other sequences, with identities indicated by colon (:) and similarities by period (.). In the summary line below the 10 aligned sequences, a colon (:) notes amino acid positions where all 10 sequences contain the identical amino acid, a period (.) indicates all 10 sequences contain identical or similar amino acids, and an asterisk (*) indicates 9 of the 10 aligned sequences have identical or similar amino acids. Gaps inserted to optimize alignments are indicated by a dash (−). The shaded portions of the RmAQP1 sequence indicate the six predicted transmembrane helical regions.
Protein Alignment And Clustalw Function In Macvector Version 18.5.1, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/protein alignment and clustalw function in macvector version 18.5.1/product/MacVector inc
Average 90 stars, based on 1 article reviews
protein alignment and clustalw function in macvector version 18.5.1 - by Bioz Stars, 2026-03
90/100 stars
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clustalw alignment function of the macvectortm  (Accelrys)
90
Accelrys clustalw alignment function of the macvectortm
Amino acid sequence alignments of RmAQP1-3 with putative aquaporins from other tick species. Alignment was by the <t>ClustalW</t> multiple alignment function of MacVector 12.7.5 using the Gonnet matrix with open gap penalty of 10 and extend gap penalty of 0.05. Determination of amino acid similarity was by chemical properties of amino acid side chains with DE, AGILV, NQ, FWY, RHK, ST, CM, and P comprising the groups considered as conservative substitutions. The accession numbers for the putative tick aquaporins from R. appendiculatus , R. sanguineus , I. scapularis , I. ricinus , and D. variabilis are CD780384, CAR66115, XP_002399794, CAX48964, and ABI53034, respectively. One member each from the human aquaporin families 3 (NP 004916) and 7 (NP 001161) are also included in the alignment. The RmAQP1 was used as the model for comparing other sequences, with identities indicated by colon (:) and similarities by period (.). In the summary line below the 10 aligned sequences, a colon (:) notes amino acid positions where all 10 sequences contain the identical amino acid, a period (.) indicates all 10 sequences contain identical or similar amino acids, and an asterisk (*) indicates 9 of the 10 aligned sequences have identical or similar amino acids. Gaps inserted to optimize alignments are indicated by a dash (−). The shaded portions of the RmAQP1 sequence indicate the six predicted transmembrane helical regions.
Clustalw Alignment Function Of The Macvectortm, supplied by Accelrys, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/clustalw alignment function of the macvectortm/product/Accelrys
Average 90 stars, based on 1 article reviews
clustalw alignment function of the macvectortm - by Bioz Stars, 2026-03
90/100 stars
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Image Search Results


Amino acid sequence alignments of RmAQP1-3 with putative aquaporins from other tick species. Alignment was by the ClustalW multiple alignment function of MacVector 12.7.5 using the Gonnet matrix with open gap penalty of 10 and extend gap penalty of 0.05. Determination of amino acid similarity was by chemical properties of amino acid side chains with DE, AGILV, NQ, FWY, RHK, ST, CM, and P comprising the groups considered as conservative substitutions. The accession numbers for the putative tick aquaporins from R. appendiculatus , R. sanguineus , I. scapularis , I. ricinus , and D. variabilis are CD780384, CAR66115, XP_002399794, CAX48964, and ABI53034, respectively. One member each from the human aquaporin families 3 (NP 004916) and 7 (NP 001161) are also included in the alignment. The RmAQP1 was used as the model for comparing other sequences, with identities indicated by colon (:) and similarities by period (.). In the summary line below the 10 aligned sequences, a colon (:) notes amino acid positions where all 10 sequences contain the identical amino acid, a period (.) indicates all 10 sequences contain identical or similar amino acids, and an asterisk (*) indicates 9 of the 10 aligned sequences have identical or similar amino acids. Gaps inserted to optimize alignments are indicated by a dash (−). The shaded portions of the RmAQP1 sequence indicate the six predicted transmembrane helical regions.

Journal: Parasites & Vectors

Article Title: Rhipicephalus ( Boophilus ) microplus aquaporin as an effective vaccine antigen to protect against cattle tick infestations

doi: 10.1186/s13071-014-0475-9

Figure Lengend Snippet: Amino acid sequence alignments of RmAQP1-3 with putative aquaporins from other tick species. Alignment was by the ClustalW multiple alignment function of MacVector 12.7.5 using the Gonnet matrix with open gap penalty of 10 and extend gap penalty of 0.05. Determination of amino acid similarity was by chemical properties of amino acid side chains with DE, AGILV, NQ, FWY, RHK, ST, CM, and P comprising the groups considered as conservative substitutions. The accession numbers for the putative tick aquaporins from R. appendiculatus , R. sanguineus , I. scapularis , I. ricinus , and D. variabilis are CD780384, CAR66115, XP_002399794, CAX48964, and ABI53034, respectively. One member each from the human aquaporin families 3 (NP 004916) and 7 (NP 001161) are also included in the alignment. The RmAQP1 was used as the model for comparing other sequences, with identities indicated by colon (:) and similarities by period (.). In the summary line below the 10 aligned sequences, a colon (:) notes amino acid positions where all 10 sequences contain the identical amino acid, a period (.) indicates all 10 sequences contain identical or similar amino acids, and an asterisk (*) indicates 9 of the 10 aligned sequences have identical or similar amino acids. Gaps inserted to optimize alignments are indicated by a dash (−). The shaded portions of the RmAQP1 sequence indicate the six predicted transmembrane helical regions.

Article Snippet: Alignment was by the ClustalW multiple alignment function of MacVector 12.7.5 using the Gonnet matrix with open gap penalty of 10 and extend gap penalty of 0.05.

Techniques: Sequencing